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Curriculum vitae

Publications


Dr. Martin Fraunholz - Publications
  • Giese B, Dittmann S, Paprotka K, Levin K, Weltrowski A, Biehler D, Lâm TT, Sinha B, Fraunholz MJ. (2009) Staphylococcal alpha-toxin is not sufficient to mediate escape from phagolysosomes in upper airway epithelial cells. Infect Immun. 77(9) p. 3611–3625.

  • Reder, A., Höper, D., Weinberg, C., Gerth, U., Fraunholz, M., Hecker, M. (2008) The Spx paralogue MgsR (YqgZ) controls a subregulon within the general stress response of Bacillus subtilis. Mol Microbiol.69(5):1104-20.

  • Scholz M., Fraunholz M.J. (2008) A computational model of gene expression reveals early transcriptional events at the subtelomeric regions of the malaria parasite, Plasmodium falciparum. Genome Biol. 9(5):R88.

  • Hu, K., Johnson, J., Florens, L., Fraunholz, M., Suravajjala, S., DiLullo, C., Yates, J., Roos, D.S., J.M. Murray (2006) Cytoskeletal components of an invasion machine - the apical complex of Toxoplasma gondii. PLoS Pathogens 2(2):e13.

  • Fraunholz, M.J. (2005) Systems biology in malaria research. Trends Parasitol. 21 (9): 393-395.

  • Harb O.S., Chatterjee B., Fraunholz M.J., Crawford M.J., Nishi M., Roos D.S. (2004) Multiple Functionally Redundant Signals Mediate Targeting to the Apicoplast in the Apicomplexan Parasite Toxoplasma gondii. Eukaryot Cell. 3(3):663-674. PMID: 15189987

  • Ralph, S.A., van Dooren, G.G., Waller, R.F., Crawford, M.J.,Fraunholz, , M.J., Foth, B.J., Tonkin, C.J., Roos, D.S., McFadden, G.I. (2004) Metabolic Maps and functions of the Plasmodium falciparum apicoplast. Nature Reviews Microbiology. 2: 203-216.

  • Fraunholz M. J., Roos, D. S. (2003) PlasmoDB: exploring genomics and post-genomics data of the malaria parasite, Plasmodium falciparum. Redox Report. 8:317-320. PMID: 14962373

  • Foth, B.J., Ralph, S.A, Tonkin, C.J., Struck, N.S., Fraunholz, M.J., Roos, D.S., Cowman, A.F., McFadden, G.I. (2003) Dissecting Apicoplast Targeting in the Malaria Parasite Plasmodium falciparum. Science. 299:705-708.

  • Bahl, A., Brunk, B., Crabtree, J., Fraunholz, M.J., Gajria, B., Grant, G.R., Ginsburg, H., Gupta, D., Kissinger, J.C., Labo, P., Li, L., Mailman, M.D., Milgram, A.J., Pearson, D.S., Roos, D.S., Schug, J., Stoeckert, C.J. Jr, Whetzel, P. (2003). PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucl. Acids. Res. 31: 212-215.

  • Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., Carlton, J.M., Pain, A., Nelson, K.E., Bowman, S., Paulsen, I.T., James, K., Eisen, J.A., Rutherford, K., Salzberg, S.L., Craig, A., Kyes, S., Chan, M.S., Nene, V., Shallom, S.J., Suh, B., Peterson, J., Angiuoli, S., Pertea, M., Allen, J., Selengut, J., Haft, D., Mather, M.W., Vaidya, A.B., Martin, D.M., Fairlamb, A.H., Fraunholz, M.J., Roos, D.S., Ralph, S.A., McFadden, G.I., Cummings, L.M., Subramanian, G.M., Mungall, C., Venter, J.C., Carucci, D.J., Hoffman, S.L., Newbold, C., Davis, R.W., Fraser, C.M., Barrell, B. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419(6906):498-511.

  • Kissinger, J.C., Brunk, B.P., Crabtree, J., Fraunholz, M.J., Gajria, B., Milgram, A.J., Pearson, D.S., Schug, J., Bahl, A., Diskin, S.J., Ginsburg, H., Grant, G.R., Gupta, D., Labo, P., Li, L., Mailman, M.D., McWeeney, S.K., Whetzel, P., Stoeckert, C.J., Roos, D.S. (2002) The Plasmodium genome database. Nature. 419(6906):490-492.

  • Matrajt, M., Nishi, M., Fraunholz, M.J., Peter, O., Roos, D.S. (2002). Amino-terminal control of transgenic protein expression levels in Toxoplasma gondii. Mol. Biochem. Parasitol. 120:285-289.

  • Roos, D.S., Crawford, M.J., Donald, R.G., Fraunholz, M.J., Harb, O.S., He, C.Y., Kissinger, J.C., Shaw, M.K., Striepen, B. (2002) Mining the Plasmodium genome database to define organellar function: what does the apicoplast do ? Philos. Trans. R. Soc. Lond. B. Biol. Sci. 357(1417):35-46.

  • Bahl, A., Brunk, B., Coppel, R.L., Crabtree, J., Diskin, S.J., Fraunholz, M.J., Grant, G.R., Gupta, D., Huestis, R.L., Kissinger, J.C., Labo, P., Li, L., McWeeney, S.K., Milgram, A.J., Roos, D.S., Schug, J., Stoeckert, C.J. Jr (2002). PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30(1):87-90.

  • S. Douglas, S. Zauner, M. Fraunholz, M. Beaton, S. Penny, L.-T. Deng, X. Wu, M. Reith, T. Cavalier-Smith, U.-G. Maier (2001) The highly reduced genome of an enslaved algal nucleus. Nature. 410 (6832): 1009-1126.

  • The Plasmodium Genome Database Collaborative (2001). PlasmoDB: an integrative database of the Plasmodium falciparum genome tools for accessing and analyzing finished and unfinished sequence data. Nucleic Acids Res. 29 (1):66-69.

  • Deane, J.A., Fraunholz, M., Su, V., Maier, U.-G., Martin, W., Durnford, D.G., McFadden, G.I. (2000). Evidence for nucleomorph to host nucleus gene transfer: light-harvesting complex proteins from cryptomonads and chlorarachniophytes. Protist 151:239-252.

  • Lockhart, P. J., Huson D., Maier, U.-G., Fraunholz, M. J., Van der Peer, Y., Barbrook, A. C., Howe, C. J., Steel, M. A. (2000). How molecules evolve on the eubacterial tree of life. Mol. Biol. Evol. 17(5), 835-838.

  • Maier, U.-G., Fraunholz, M., Zauner, S., Penny. S., Douglas, S. (2000). A Nucleomorph-Encoded CbbX and the Phylogeny of RuBisCo Regulators. Mol. Biol. Evol. 17(4), 576-583.

  • Zauner, S., Fraunholz, M., Wastl, J., Penny. S., Beaton, M., Cavalier-Smith, T., Maier, U.-G., Douglas, S. (2000). Chloroplast protein and centrosomal genes, a tRNA intron, and odd telomeres in an unusually compact eukaryotic genome, the cryptomonad nucleomorph. Proc. Natl. Acad. Sci. USA 97, 200-205.

  • Wastl, J., Fraunholz, M., Zauner, S., Maier, U.-G. (1999) Lessons from nucleomorphs and chloroplasts. In: From symbiosis to eukaryotism - ENDOCYTOBIOLOGY VII. Wagner E, Normann J, Greppin H, Hackstein JHP, Herrmann RG, Kowallik KV, Schenk HEA, Seckbach J., eds., pp.319-326, Geneva University Press

  • Wenderoth, K., Marquardt, J., Fraunholz, M. J., Van de Peer, Y., Wastl, J., Maier, U.-G. (1999). The taxonomic position of Chlamydomyxa labyrinthuloides ARCHER. Europ. J. Phycol. 34: 97-108.

  • Wastl, J., Fraunholz, M. J., Zauner, S., Douglas, S., Maier, U.-G. (1999). Ancient gene duplication and differential gene flow in plastid lineages: The GroEL/Cpn60 example. J. Mol. Evol. 48: 112-117.

  • Fraunholz, M. J., Mörschel, E., Maier, U.-G. (1998). The chloroplast division protein FtsZ is encoded by a nucleomorph gene in cryptomonads. Mol. Gen. Genet. 260:207-211.


Book chapters
  • Matthias Scholz, Martin Fraunholz, and Joachim Selbig (2007). Nonlinear principal component analysis: neural network models and applications. In A.N. Gorban, B. Kégl, D.C. Wunsch, and A. Zinovyev, editors, Principal Manifolds for Data Visualization and Dimension Reduction, LNCS Vol. 58, Springer-Verlag Berlin Heidelberg.
  • Crawford, M.J., Fraunholz, M.J., Roos, D.S. (2003). Energy metabolism in the Apicomplexa. In: Molecular Medical Parasitology. Joseph Marr, Nilsen, T., Komuniecki, R. (eds.) Academic Press. p. 154-169.

  • Fraunholz, M. J., Wastl, J., Zauner, S., Rensing, S. A., Scherzinger, M.M., Maier, U.-G. (1997). The evolution of cryptophytes. Plant Syst. Evol. [Suppl.] 11:163-174. In Bhattacharya, D. 1997. Origins of algae and their plastids. (Editor) Springer-Verlag, Wien. Information


Dissertation
  • Dissertation (1999, Philipps University, Marburg, Germany, [german]) Das Nucleomorph Chromosom II der Cryptomonade Guillardia theta: Struktur, Sequenzanalyse und evolutionäre Implikationen; translated title: "The nucleomorph chromosome II of the cryptomonad alga Guillardia theta: structure, sequence analysis and evolutionary implications"




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